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Factory For Contig Assembly - NGS-WGS (Illumina/BGI) – Biomarker

Bioinformatics

Raw data quality control Alignment with reference genome SNP identification SNP annotation SNP calling among samples Small InDel identification Small Indels between sample SV calling Small InDel annotation CNV calling Distribution of variations on genome Circos map Function annotation on variations (NR,SwissProt,GO,KEGG,COG,KOG,Pfam) PCR primer design

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