● Platforms: Illumina NovaSeq 6000 and NovaSeq X Plus
● Sequencing modes: PE150 and PE250
● Quality control of libraries before sequencing
● Sequencing data QC and delivery: delivery of QC report and raw data in fastq format after demultiplexing and filtering Q30 reads
|
Platform |
Flow Cell |
Sequencing mode |
Unit |
Estimated output |
|
NovaSeq X |
10B (8 lanes) |
PE150 |
Single Lane Partial Lane |
375Gb / Lane |
|
25B ( 8 lanes) |
PE150 |
Single Lane Partial Lane |
1000 Gb/Lane |
|
|
NovaSeq 6000 |
SP Flow cell (2 lanes) |
PE250 |
Flow Cell Single Lane Partial Lane |
325-400 M reads / Lane |
|
S4 Flow cell (4 lanes) |
PE150 |
Flow Cell Single Lane Partial Lane |
~800 Gb / Lane |
|
Data Amount (Gb) |
Conc. (qPCR) PE150 |
Conc. (qPCR) PE250 |
Volume |
|
|
Partial Lane
|
G ≤ 10 |
≥ 1 nM |
≥ 2nM |
≥ 25 μl |
|
10 < G ≤ 50 |
≥ 2 nM |
≥ 3nM |
≥ 25 μl |
|
|
50 < G ≤ 100 |
≥ 3 nM |
≥ 4nM |
≥ 25 μl |
|
|
G > 100 |
≥ 4 nM |
≥ 4nM |
≥ 25 μl |
|
|
Single Lane |
Per Lane |
≥ 1.5 nM/Library pool |
≥ 2 nM/Library pool |
≥ 25 µL/Library pool |
In addition to concentration and total amount, a suitable peak pattern is also required.
Note: Lane sequencing of low diversity libraries requires PhiX spike-in to ensure robust base calling.
We recommend submitting pre-pooled libraries as samples for lane sequencing. If you require BMKGENE to perform library pooling, please refer to the library requirements for partial lane sequencing.
For PE150 sequencing, the insert size should be 300–400 bp (excluding adapters); for PE250 sequencing, the insert size should be 150–500 bp (excluding adapters).
Libraries should have a single main peak, no adapter contamination and no primer dimers.