| Type | Concentration and Purity | Agarose Gel | ||||
|---|---|---|---|---|---|---|
| Conc. (ng/μl) |
Amount | OD 260/280 |
OD 260/230 |
Nanodrop/Quibit | ||
| WGS-FF* NGS |
≥ 1.0 | ≥ 30 ng | - | - | - |
No or limited Contamination. No or with degradation (the main band is clear). FFPE DNA: If the main band is unclear, a distinct smear above 2kb is required. |
| WGS-FFPE* NGS |
≥ 5.0 | ≥ 50 ng | - | - | - | |
| WGS NGS PCR-FREE |
≥ 40 | ≥ 500 ng | - | - | - | |
| WGS ONT |
≥ 40 | ≥ 2.0 μg | 1.7-2.2 | 1.5-3.0 | 0.8-2.5 | |
| WGS PB |
≥ 50 | ≥ 8.0 μg | 1.7-2.2 | 0.8-2.5 | 0.8-2.5 | |
Notes:
FF: Fresh-frozen samples.
FFPE: Formalin-fixed, paraffin-embedded samples.
| Tissue or Extracted DNA | Illumina/MGI | Nanopore | PacBio |
|---|---|---|---|
| Muscle | 0.5–1 g | ≥ 3.5 g | ≥ 3.5 g |
| Blood | 1.5 mL | ≥ 0.5 mL | ≥ 5 mL |
| Cultured Cells | ≥ 1 × 106 | ≥ 1 × 107 | ≥ 1 × 108 |
| FFPE Sample | |||
| Extracted DNA |
Regular Library Preparation Concentration: ≥ 1 ng/μL Amount: ≥ 30 ng Limited or no degradation or contamination |
Concentration: ≥ 40 ng/μL Amount: ≥ 4 μg/flow cell/sample OD 260/280: 1.7–2.2 OD 260/230: ≥ 1.5 Limited or no degradation or contamination |
Concentration: ≥ 50 ng/μL Amount: ≥ 10 μg/flow cell/sample OD 260/280: 1.7–2.2 OD 260/230: 1.8–2.5 Limited or no degradation or contamination |
|
PCR-free Library Preparation Concentration: ≥ 40 ng/μL Amount: ≥ 500 ng Limited or no degradation or contamination |
|||
|
DNA Extracted from FFPE Samples Concentration: ≥ 5 ng/μL Fragments longer than 2 kb |
- | - |