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DNA/RNA sequencing -PacBio Sequencer

Features

Two sequencing modes on PacBio sequencer: Continuous Long Read (CLR) and Circular Consensus Read (CCS)

Sequencing Mode Library Size Theoretical Data Yield (Per Cell) Single-base Accuracy Applications
CLR 20Kb, 30Kb, etc. 80 Gb to 130 Gb Approx. 85% De novo, SV calling, etc.
CCS 15-20 Kb

14 to 40 Gb/Cell (Sequel II)

70 to 110 Gb/Cell (Revio)

Depends on the samples

Approx. 99% De novo, SNP/Indel/SV calling, Iso-Seq,

Comparison of the performance and features of Revio and Sequel II

Terms

Sequel II system

Revio system

Increase

Higher density

8 million ZMWs

25 million ZMWs

3x

Independent stages

1

4

4x

Shorter run times

30 hours

24 hours

1.25x

30X HiFi human genomes / year

88

1,300

15x overall

Service Advantages

Sample Requirements


Sample Type Amount Concentration (Qubit®) Volume Purity Others
 Genomic DNA Depend on Data Requirement ≥50 ng/μl ≥15μl OD260/280=1.7-2.2;
OD260/230=1.8-2.5;
Clear peak at 260 nm,no contaminations
Concentration needs to be measured by Qubit and Qubit/Nanopore = 0.8-2.5
Total RNA ≥1.2μg ≥120 ng/μl ≥15μl OD260/280=1.7-2.5;
OD260/230=0.5-2.5;no contaminations

 RIN value ≥7.5

5≥28S/18S≥1

 

Service Workflow

Sample preparation

Library construction

Sequencing

Data analysis

Project delivery